Journal Publications


G. Shull, C. Haffner, W. B Huttner, E. Taverna, S. B. Kodandaramaiah, Robotic platform for microinjection into single cells in intact tissue, BioRxiv 480004

L. Ghanbari, R. E. Carter, M. L. Rynes, J. Dominguez, G. Chen, A. Naik, J. Hu, M. A. K. Sagar, L. Haltom, N. Mossazghi, M. M. Gray, S. L. West, K. W. Eliceiri, T. J. Ebner,  S. B. Kodandaramaiah, Cortex-wide neural interfacing via transparent polymer skulls, Nature Communications, (2019) 10:1500 |

L. Ghanbari*, M. L Rynes*, J. Hu, D. Sousa Schulman, G. W. Johnson, M. Laroque, G. M Shull, S B Kodandaramaiah, Craniobot: A computer numerical controlled robot for cranial microsurgeries, Scientific Reports 2019 *Equal Contribution

B. D. Allen,  Caroline Moore-Kochlacs, J. G. Bernstein, J. Kinney, J. Scholvin, L. Seoane, C. Chronopoulos, C. Lamantia, S. B. Kodandaramaiah, M.Tegmark and E. S. Boyden, Automated in vivo patch clamp evaluation of extracellular multielectrode array spike recording capability, J Neurophysiology 2018

S. B. Kodandaramaiah*, F. J. Flores* , G. L. Holst, A. C. Singer, X. Han , E. N. Brown, Edward S. Boyden^, C. R. Forest^ Multi-neuron intracellular recording in vivo via interacting autopatching robots, Elife 2018, * Equal Contribution, ^ Co-corresponding authors 

H. J. Suk, I. Van Welie, S. B.  Kodandaramaiah, B. D.  Allen, C. R.  Forest, E. S.  Boyden, Closed-Loop Real-Time Imaging Enables Fully Automated Cell-Targeted Patch-Clamp Neural Recording In Vivo, Neuron 2017

K. D. Piatkevich, H. J. Suk, S. B. Kodandaramaiah, F. Yoshida, E. M. DeGennaro, M. Drobizhev, T. E. Hughes, R. Desimone, E. S Boyden, V. V. Verkhusha, Near-Infrared Fluorescent Proteins Engineered from Bacterial Phytochromes in Neuroimaging, Biophysical Journal2017

I. Kolb, G. Talei Franzesi, M. Wang, S. B. Kodandaramaiah, C. R. Forest, E. S. Boyden, and A. C. Singer, Evidence for long-timescale patterns of synaptic inputs in CA1 of awake behaving mice, J Neuroscience 2017

N. Grossman, D. Bono, N. Dedic, S. B. Kodandaramaiah, A. Rudenko, H. Suk, A. M. Cassara, E. Neufeld, N. Kuster, L. Tsai, A. Pascual-Leone, E. S. Boyden, Noninvasive Deep Brain Stimulation via Temporally Interfering Electric Fields, Cell 2017

A. C. Singer, G. Talei Franzesi, S. B. Kodandaramaiah, F. J. Flores, J. D. Cohen, A. K. Lee, C. Börgers, C. R. Forest, N. J. Kopell, E. S. Boyden, Mesoscale-duration activated states gate spiking in response to fast rises in membrane voltage in the awake brain, J Neurophysiology 2017

Q. Wu, I. Kolb, B. Callahan, Z. Su, W. Stoy, S. B. Kodandaramaiah, R. Neve, H. Zeng, E.S. Boyden, C. R.  Forest, and Alexander Chubykin, Integration of autopatching with automated pipette and cell detection in vitro, J Neurophysiology 2016

S. B. Kodandaramaiah, I. R. Wickersham, G. B. Holst, A. C. Singer, G. Talei-Franzesi, C. R. Forest, E. S. Boyden, Assembly and operation of the autopatcher for automated intracellular neural recording in vivo, Nature Protocols 2016

M.V. Baratta, S.B. Kodandaramaiah, P.E. Monahan, P.-A. Lin, K. Kim, A. Yang C.R. Forest, E.S. Boyden, K.A. Goosens, Stress enables reinforcement-elicited serotonergic consolidation of fear memory. Biological Psychiatry 2015

R. R. Harrison, I. Kolb, S. B. Kodandaramaiah, A. A. Chubykin, A. Yang, M. F. Bear, E. S. Boyden, C. R. Forest, Microchip amplifier for in vitro, in vivo, and automated whole-cell patch-clamp recording, J Neurophysiology 2014

A. S. Chuong, M. L. Miri* , V. Busskamp*, G.A.C. Matthews*, L.C.Acker*, A.T. Soresnsen, A. Young, N. C. Klapoetke, M.A. Henninger, S.B. Kodandaramaiah, M. Ogawa, S. B. Ramanlal, R. C. Bandler, B. D. Allen, C.R. Forest, B.Y.Chow, X. Han, Y. Lin,K.M. Tye, R. Roska , J.A. Cardin, E. S. Boyden, Noninvasive optical inhibition with a red-shifted microbial rhodopsin, Nature Neuroscience 2014 (*, equal contribution) 

S. B. Kodandaramaiah, E.S. Boyden and C. R. Forest, E. S. Boyden, In Vivo Robotics: Towards the Automation of Neuroscience and Other Intact-System Biological Fields, Annals of NYAS 2013

S.B. Kodandaramaiah, G. Talei Franzesi, B.Y. Chow, E.S. Boyden, C.R. Forest, Automated whole-cell patch clamp electrophysiology of neurons in vivo. Nature Methods 2012


PEER-reviewed Conference Proceedings

1) L. Ghanbari, R. Carter, M. Rynes, J. Dominguez, G. Chen, J.Hu, T. Ebner, S. B. Kodandaramaiah, See-Shells: Transparent Polymer Skulls for Pan-Cortical Neural Interfacing, 9th International IEEE EMBS Conference on Neural Engineering, San Francisco, CA, March 20th-23rd, 2019

2) P. Donaldson, L. Ghanbari, M. Rynes, S. B. Kodandaramaiah, S. Swisher, Inkjet-Printed Silver Electrode Array for In-Vivo Electrocorticography,  9th International IEEE EMBS Conference on Neural Engineering, San Francisco, CA, March 20th-23rd, 2019

3)  J. An, F. J. Flores, S. B. Kodandaramaiah, I. D. Betta, K. Nikolaeva, E. S. Boyden, C. R. Forest, E. N. Brown, Automated Assessment of Loss of Consciousness Using Whisker and Paw Movements During Anesthetic Dosing in Head-Fixed Rodents, 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) Honolulu, HI

4) G. Shull, J. Hu, J. Buschnyj, H. Koon, J. Abel, S. B. Kodandaramaiah, Shape Memory Alloy Actuatable Woven Neural Probes, ASME 2018 Conference on Smart Materials, Adaptive Structures and Intelligent Systems, San Antonio,  TX 

5) L. Ghanbari, R. Carter, M. Rynes, J. Dominguez, J. Hu, N. Mossazghi, M. Laroque, T. Ebner, S. B. Kodandaramaiah, Brain Windows: Digitally Generated 3D Cranial Windows for Pan Cortical Neural Interfacing, Proceedings of the 2017 Design of Medical Devices Conference, Minneapolis, MN, April 10th-12th, 2018

6) G.Shull, C. Haffner, W. Huttner, S. B. Kodandaramaiah, E. Taverna, A robot for high throughput analysis of neural stem cells in intact tissue, Proceedings of the 2017 Design of Medical Devices Conference, Minneapolis, MN, April 10th-12th, 2018  

7) M. Rynes, L. Ghanbari, J. Hu, D. S. Schulman, G. Johnson, M. Laroque, S. B. Kodandaramaiah, Principles of Computer Numerical Control Applied to Small Animal Microsurgical Procedures, Proceedings of the 2017 Design of Medical Devices Conference, Minneapolis, MN, April 10th-12th, 2018

8) G. Johnson, L.Lehto, S. Mangia, O. Gröhn, S. Michaeli, S. B. Kodandaramaiah, Conceptual Design of Flex-DBS, a Mechanically Reconfigurable Deep Brain Stimulation Probe, Proceedings of the 2017 Design of Medical Devices Conference, Minneapolis, MN, April 11th-13th, 2017

9) B. D. Allen, C. Moore-Kochlacs, J. Scholvin, J. B. Kinney, J. Bernstein, S. B. Kodandaramaiah, N. Kopell, E. S. Boyden, Towards ground truth in ultra-dense neural recording, Proceedings of the Computational and Systems Neuroscience (Cosyne) Meeting 2016, Salt Lake City, UT, February 25 - 28, 2016.

10) A. Singer, G.T. Franzesi, S. B. Kodandaramaiah, F. Flores, C. Forest, N. Kopell, E. Boyden, Interaction of Slow Network Integration and Fast Neural Integration Towards Spike Generation, Proceedings of the Computational and Systems Neuroscience (Cosyne) Meeting 2015, Salt Lake City, UT, Mar 5-8, 2015. 

 11) S.B. Kodandaramaiah, F. Flores, G. Holst, I. Wickersham, E. Brown, C.R. Forest, E.B. Boyden, The Multipatcher: A Robot for High Density Measurement of Intracellular Recordings In Vivo, Proceedings of the Biomedical Engineering Society (BMES) 2014, San Antonio, TX, Oct 22-25, 2014. 

12) I. Kolb*, G. Holst*, S.B. Kodandaramaiah, W. Stoy, E.S. Boyden, C.R. Forest. Linear Micro-Actuation System for Patch-Clamp Recording. Proceedings of the 29th Annual Meeting of the American Society for Precision Engineering. Boston, MA. 

13) J. Go, A. Fan, C. Lu, S. B. Kodandaramaiah, G. L. Holst, W. Stoy, I. Kolb, E. S. Boyden, C. R. Forest, Fully-automated in vivo single cell electrophysiology, Proceedings of the 28th Annual Meeting of the American Society for Precision Engineering 2013, St. Paul, MN, October 20-October 55, 2013

 14) I. Kolb, G. B. Holst, B. Goldstein, S.B. Kodandaramaiah, E.S. Boyden, E. Culurciello, C.R. Forest, Automated, in-vivo, whole-cell electrophysiology using an integrated patch-clamp amplifier, Proceedings of the 22nd Annual Computational Neuroscience Meeting (CNS 2013), Paris, France, July 13-18, 2013.  

15) S. B. Kodandaramaiah, A. S. Chuong, M. Ogawa, N. Klapoetke, M. Baratta, L. C. Acker, P. E. Monahan, F. Yoshida, E. S. Boyden, and C. R. Forest, Integration of automated patch clamp electrophysiology system with optogenetics for cell type identification in vivo, Proceedings of the Annual Meeting of the Biomedical Engineering Society (BMES) 2012, Atlanta, GA, October 24-27, 2012

16) D. Chiyo, S. B. Kodandaramaiah, K. Grosh, Z. D. Ma, B. Raju, F. R. Abadi, Reactive Structure and Smart Armor for Army’s Future Ground Vehicles, Proceedings of 25th Annual Army Sciences Conference (ASC 2010), Orlando, Florida, November 29 - December 2, 2010.

17) S. B. Kodandaramaiah, S. Malik, C. R. Forest, Design and performance of telescoping micropipette arrays for high-throughput in vivo patch clamping, Proceedings of the 25th Annual Meeting of the American Society for Precision Engineering, Atlanta, GA, October 31-November 5, 2010, Awarded R.V. Jones Memorial Award for Best Student Paper.

18) N. Pak, C.R. Phaneuf, S. B. Kodandaramaiah, and C.R. Forest, Modulation of electromagnetic radiation using a dot matrix printer, Proceedings of the 25th Annual Meeting of the American Society for Precision Engineering 2010, Atlanta, GA, October 31-November 5, 2010

19) S. B. Kodandaramaiah, N. Chronis, An Opto-fluidic sensor for monitoring Intra-cranial pressure (ICP), Proceedings of the 12th International Conference on micro-Total Analysis Systems, San Diego, CA, October 2008.

20) J. Gregory, Y.S. Ng, E.M. Jung, S. B. Kodandaramaiah, Dielectrophoretic whole blood separation device integrating a spiral pump and cytometry, Proceedings of the 6th IEEE Sensors Conference, Atlanta, GA, October 2007.